Well after work tonight I went back to do some tweaking and trying to figure out what I did to it. Finaly,( before I seen plcnut's post) I figured out what I did, when I changed the V locations for the timers, I forgot to change them in the Cmore....go ahead laugh, I did, had to look at it with a set of fresh eyes. So now the timers work with the Cmore and with the 06 in run mode I can see changes and the timers are staying on (retintative) the display after power is removed, energized again, so I feel better about it now. Man, what mind boggler this has been. I still have to do some work with the Cmore on the indicators, buttons, and screens matching again.
Could not have done it with you guys giving advice though, I'd still be freaking out and sending e-mails to ADC, forwarding them to my home mail, so a big thanks to you guys.