Well...my favorite answer to this issue is Do-more. But I'll have somebody dump some knowledge on you here shortly. I'm sure the info exists, but the manual is...um...not ADC's best effort.
I will be looking at Do-More for the next version of the machine (2x size) but for now I'm stuck with this DL06/H0-CTRIO2 combo to drive my ball screws.
Loading and running a static pulse profile or homing either or both axis with dual prox style homing works great.
My issue stemmed from needing variables keyed in via a c-more micro (tool length offset + groove depth - wood thickness) to tell my stepper how far to move my 16hp spindle motor.
Searching online for examples was all but useless.
@Greg - Thanks I will try to make something work tomorrow using the flow charts as a guide.