Hi Darenko, I assume the "??" means you are wondering why there are no replies to this post. Sometimes some of the posts slip through the cracks, and this is one we missed. My apologies to tkempher and you.
The CTRIO can count 100KHz (and we are soon releasing a CTRIO2 that can count up to 1MHz). There is a feature on the CTRIO called "Capture" but in tkempher's application, it may not be quick enough if he was going to use it in rapid succession. The reason being once you enable the Capture (with a bit), and the Capture pulse comes along and the CTRIO's counter captures the count, then the Capture feature must be re-enabled to get the next one.
Hope this helps!