The box leg switches between Auto and Manual. While in manual, the input and output scales are still running, but basically nothing else. On the rising edge of the input (initial switch into Auto) there are some things that get initialized internally, which could be causing what you are seeing. That still shouldn't matter much if the PV and SP are close. It points to the PV being considerably different than the SP.
If nothing is changing, you could just bypass execution of the loop by putting in a task that isn't being executed, rather than taking it out of Auto.