Yeah, that's one of those "scoping" A vs. B decisions.
Will customers be accumulating timer WITHIN the stage, off and on, or is this an INTER-STAGE TMRA (e.g. allow multile TMRA's across various stages???). We chose to implement it as the FORMER, vs. trying to support multiple TMRAs across multiple stages.
If you need it to behave like an INTER-STAGE TMRA, then it needs to be scoped at the top of your program code-block, NOT within a specific stage. You will have to stick it in ladder logic ABOVE your first stage, then the accumulator-leg will also need the S bit contact in serial with your existing logic.
An alternative is to save off the accumulator value at the JMP OUT of the stage, then load it back in when you get back to that stage (a positive differential contact w/S bit at the top of the stage can do that nicely; similarly a negative differential contact w/S bit at bottom of the stage can capture the accumulator value nicely).