Sadly, that is the nature of the stack based architecture (all Texas Instrument controllers, Koyo DL controllers, and Do-more). It does not follow true power flow (never has). Ladder Logic gets reduced to a binary expression tree, then to an RPN-line language (STR, AND, OR)
So the parallel rung in the middle screen shot becomes
STR C2 (PUSH C2 value on to the boolean stack)
SET C5 (take top of stack, if it is ON, turn ON C5 - no change to stack state)
RST C6 (take top of stack, if it is ON, turn OFF C6 - no change to stack state)
AND C1 (AND top of stack with C1 value)
SET C3 (take top of stack, if it is ON, turn ON C3 - no change to stack state)
RST C4 (take top of stack, if it is ON, turn OFF C4)
The ladder is ALWAYS "optimized" back to the "reverse generation" of the mnemonics (this is why you don't end up with dangling wires or extra space between contacts or between contact region and coil region - contact logic is optimized/justified to the top and to the left, coils are optimized/justified to go to the right and down the right power rail, NOT based off the CAD diagram of the wire drawing). Some PLCs do it that way and follow a strict power-flow, ladder logic flow behavior. Do-more does not.
(note that the boolean co-processor nor the Do-more PLC knows what a "ladder rung" is - that is completely fabricated by Designer; it just knows STR/AND/OR etc. Hence, the boolean stack is 32 deep, but circular - it never "resolves" back to a stack depth of 0 because the OUT/SET/RST coils NEVER POP the boolean stack; the MATH stack however - that's completely different architecture).